JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCNU1_chr8_36779374_36941125	0/0	a0003	1149	65	18	9	30	2	6	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	a0004	1149	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	a0005	1149	1	0	0	1	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	a0006	1149	1	0	0	0	1	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNU1_chr8_36779374_36941125	0/0	a0007	1149	1	1	0	0	0	0	copy fasta	KCNU1	chr8	36779374	36941125
KCNV1_chr8_109958636_109980771	1/1	a0001	500	371	92	62	157	14	44	copy fasta	KCNV1	chr8	109958636	109980771
KCNV1_chr8_109958636_109980771	0/0	a0002	38	1	0	0	1	0	0	copy fasta	KCNV1	chr8	109958636	109980771
KCNV2_chr9_2712510_2735037	1/1	a0001	545	357	52	67	180	16	40	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0002	545	63	38	14	4	2	5	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0003	545	8	0	0	8	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0004	545	3	0	0	3	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0005	545	3	3	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0006	545	2	2	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0007	545	1	1	0	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0008	545	1	0	0	0	0	1	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0009	545	1	0	1	0	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0010	545	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0011	545	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCNV2_chr9_2712510_2735037	0/0	a0012	545	1	0	0	1	0	0	copy fasta	KCNV2	chr9	2712510	2735037
KCP_chr7_128871865_128915709	1/1	a0001	1628	132	11	33	58	6	22	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0002	1628	34	2	4	21	2	5	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0003	1628	32	0	5	24	0	3	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0004	1628	22	13	3	4	0	2	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0005	1628	16	9	0	6	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0006	1628	15	14	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0007	1628	12	1	0	9	1	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0008	1628	11	5	0	3	0	3	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0009	1628	10	9	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0010	1628	9	0	2	5	1	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0011	1628	5	5	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0012	1628	4	1	2	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0013	1628	3	3	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0014	1628	3	0	0	2	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0015	1628	3	3	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0016	1628	3	0	1	1	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0017	1628	3	2	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0018	1628	3	0	2	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0019	1629	3	0	2	0	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0020	1628	2	2	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0021	1628	2	0	1	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0022	1628	2	0	0	2	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0023	1628	2	0	0	0	0	2	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0024	1628	2	0	2	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0025	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0026	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0027	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0028	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0029	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0030	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0031	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709