JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCP_chr7_128871865_128915709	0/0	a0032	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0033	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0034	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0035	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0036	1628	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0037	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0038	1579	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0039	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0040	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0041	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0042	1628	1	0	0	0	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0043	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0044	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0045	1628	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0046	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0047	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0048	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0049	1628	1	0	0	0	1	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0050	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0051	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0052	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0053	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0054	1628	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0055	1628	1	0	1	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0056	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0057	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0058	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0059	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0060	1628	1	0	0	1	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0061	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0062	1628	1	1	0	0	0	0	copy fasta	KCP	chr7	128871865	128915709
KCP_chr7_128871865_128915709	0/0	a0063	1628	1	0	0	0	0	1	copy fasta	KCP	chr7	128871865	128915709
KCTD10_chr12_109443655_109482300	1/1	a0001	313	376	88	68	168	16	34	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	a0002	313	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD10_chr12_109443655_109482300	0/0	a0003	313	1	1	0	0	0	0	copy fasta	KCTD10	chr12	109443655	109482300
KCTD11_chr17_7347162_7359944	1/1	a0001	13	417	99	84	170	16	46	copy fasta	KCTD11	chr17	7347162	7359944
KCTD11_chr17_7347162_7359944	0/0	a0002	232	1	1	0	0	0	0	copy fasta	KCTD11	chr17	7347162	7359944
KCTD12_chr13_76875175_76891405	1/1	a0001	325	466	95	80	224	18	47	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	a0002	325	1	1	0	0	0	0	copy fasta	KCTD12	chr13	76875175	76891405
KCTD12_chr13_76875175_76891405	0/0	a0003	325	1	0	0	0	0	1	copy fasta	KCTD12	chr13	76875175	76891405
KCTD13_chr16_29901339_29931226	1/1	a0001	329	357	84	63	156	16	36	copy fasta	KCTD13	chr16	29901339	29931226
KCTD13_chr16_29901339_29931226	0/0	a0002	329	1	0	1	0	0	0	copy fasta	KCTD13	chr16	29901339	29931226
KCTD14_chr11_78010715_78028276	1/1	a0001	255	439	67	81	223	18	48	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	a0002	242	23	23	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	a0003	242	3	3	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	a0004	255	1	0	0	1	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	a0005	255	1	1	0	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD14_chr11_78010715_78028276	0/0	a0006	255	1	0	1	0	0	0	copy fasta	KCTD14	chr11	78010715	78028276
KCTD15_chr19_33791870_33820761	1/1	a0001	283	370	90	74	142	18	44	copy fasta	KCTD15	chr19	33791870	33820761
KCTD16_chr5_144165873_144490686	0/0	a0001	428	155	54	34	42	8	17	copy fasta	KCTD16	chr5	144165873	144490686