JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCTD5_chr16_2677523_2714030	0/0	a0003	234	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD6_chr3_58487096_58507356	1/1	a0001	237	404	98	72	176	12	44	copy fasta	KCTD6	chr3	58487096	58507356
KCTD7_chr7_66623881_66648047	1/1	a0001	289	428	84	78	206	16	42	copy fasta	KCTD7	chr7	66623881	66648047
KCTD8_chr4_44168903_44453809	0/0	a0001	473	280	66	54	122	12	26	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	a0002	474	8	8	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	a0003	473	4	4	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	a0004	473	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	a0005	473	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD9_chr8_25422847_25463433	1/1	a0001	389	350	86	60	156	14	32	copy fasta	KCTD9	chr8	25422847	25463433
KDELR1_chr19_48377575_48396551	1/1	a0001	212	431	95	78	194	16	46	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	a0002	212	1	1	0	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR2_chr7_6456089_6489152	1/1	a0001	212	419	96	74	185	16	46	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	a0002	212	1	0	0	1	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR3_chr22_38463096_38488447	1/0	a0001	214	282	71	59	114	9	28	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/1	a0002	214	120	19	11	72	3	14	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	a0003	214	1	0	0	0	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	a0004	214	1	0	0	0	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDF1_chr1_26944562_26965468	1/1	a0001	398	213	66	37	74	8	26	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0002	398	23	0	4	6	2	11	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0003	398	14	0	0	14	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0004	398	14	6	3	0	4	1	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0005	398	9	8	1	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0006	398	2	0	2	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0007	398	1	1	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0008	398	1	0	1	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	a0009	398	1	1	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDM1A_chr1_23014468_23088689	1/0	a0001	876	348	89	60	158	10	30	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	a0002	876	1	1	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	a0003	876	1	0	0	1	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	a0004	876	1	0	0	1	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/1	a0005	876	1	0	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1B_chr6_18150422_18228854	1/1	a0001	822	361	93	56	160	12	38	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0002	822	21	2	13	4	0	2	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0003	822	4	3	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0004	822	2	0	0	2	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0005	822	1	0	0	0	1	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0006	822	1	0	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0007	822	1	0	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	a0008	822	1	0	0	0	1	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM2A_chr11_67114263_67263082	1/1	a0001	1162	219	84	48	79	2	4	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	a0002	1162	1	0	0	1	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2B_chr12_121424096_121586023	1/1	a0001	1336	267	90	45	88	10	32	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	a0002	1336	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	a0003	1336	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	a0004	474	1	0	1	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM3A_chr2_86436371_86497716	0/0	a0001	1321	219	70	39	88	9	13	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	1/1	a0002	1321	55	8	20	8	5	12	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0003	1321	16	11	4	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0004	1321	3	2	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0005	1321	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716