JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDM3A_chr2_86436371_86497716	0/0	a0006	1321	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0007	1321	1	0	1	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0008	1321	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0009	1321	1	0	0	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0010	1321	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0011	1321	1	0	0	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0012	1321	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	a0013	1321	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3B_chr5_138347685_138442027	0/1	a0001	1761	323	61	67	146	15	33	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0002	1761	11	0	2	5	1	3	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	1/0	a0003	1761	8	7	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0004	1761	5	4	1	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0005	1761	2	2	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0006	1761	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0007	1761	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0008	1761	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0009	1761	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0010	1761	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0011	1761	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	a0012	1761	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM4A_chr1_43645149_43710518	0/1	a0001	1064	267	82	32	120	8	24	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	1/0	a0002	1064	95	6	21	47	4	16	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	a0003	1064	6	6	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	a0004	1064	1	0	1	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	a0005	1064	1	0	0	1	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4B_chr19_4964113_5158598	0/0	a0001	1121	151	42	45	36	5	23	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	1/0	a0002	1096	77	23	16	22	3	12	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0003	673	12	4	0	7	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/1	a0004	1171	9	0	2	0	2	4	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0005	683	3	1	0	2	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0006	1161	2	2	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0007	692	2	0	2	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0008	1096	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0009	670	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0010	1203	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0011	945	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0012	1217	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0013	741	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0014	1164	1	0	1	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0015	1189	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0016	698	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0017	756	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0018	1164	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0019	728	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0020	1203	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	a0021	633	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4C_chr9_6752973_7180648	1/0	a0001	1056	79	34	17	22	1	4	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0002	1056	40	9	1	27	1	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0003	1056	33	20	5	2	2	4	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0004	1056	23	2	6	12	0	3	copy fasta	KDM4C	chr9	6752973	7180648