JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDM4C_chr9_6752973_7180648	0/0	a0005	1056	15	6	0	8	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0006	1056	10	5	1	3	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0007	1056	9	2	0	5	0	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0008	1056	6	0	0	3	1	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0009	1056	5	0	5	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0010	1056	4	2	2	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0011	1056	4	0	3	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0012	1056	4	0	3	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/1	a0013	1056	4	1	0	0	0	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0014	1056	3	2	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0015	1056	2	2	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0016	1056	2	0	0	0	0	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0017	1056	2	0	0	0	1	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0018	1056	2	0	2	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0019	1056	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0020	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0021	1056	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0022	1056	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0023	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0024	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0025	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0026	1056	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0027	1056	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0028	1056	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0029	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0030	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0031	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0032	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0033	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0034	1056	1	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0035	1056	1	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	a0036	1056	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4D_chr11_94968709_95004519	1/1	a0001	523	252	78	51	86	9	26	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0002	523	147	9	25	93	5	15	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0003	523	6	6	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0004	523	3	0	0	0	0	3	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0005	523	2	0	0	2	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0006	523	1	0	0	1	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	a0007	523	1	1	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4E_chr11_95020258_95032596	0/0	a0001	506	369	70	58	190	16	35	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	1/1	a0002	506	31	8	12	1	2	6	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0003	506	24	0	4	16	0	4	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0004	506	19	14	2	0	0	3	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0005	506	3	3	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0006	506	2	2	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0007	506	2	0	2	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0008	506	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0009	506	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0010	506	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	a0011	506	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596