Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AMY2A_chr1_103612427_103630780	0/0	a0014	511	1	0	0	1	0	0	copy fasta	AMY2A	chr1	103612427	103630780
AMY2B_chr1_103566589_103584534	1/1	a0001	511	395	80	68	187	13	45	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0002	511	3	0	2	0	1	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0003	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0004	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0005	396	1	0	0	0	0	1	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0006	511	1	0	1	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0007	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0008	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0009	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0010	511	1	0	0	1	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0011	511	1	0	1	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMY2B_chr1_103566589_103584534	0/0	a0012	511	1	1	0	0	0	0	copy fasta	AMY2B	chr1	103566589	103584534
AMZ1_chr7_2683202_2724683	1/0	a0001	498	298	41	56	155	12	33	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0002	498	100	47	23	20	3	7	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/1	a0003	498	11	0	0	10	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0004	498	4	1	0	1	0	2	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0005	98	2	0	2	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0006	498	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0007	498	2	2	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0008	498	2	0	0	0	2	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0009	498	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0010	498	2	0	0	2	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0011	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0012	498	1	0	0	0	1	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0013	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0014	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0015	498	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0016	498	1	1	0	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0017	498	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0018	498	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0019	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0020	498	1	0	1	0	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0021	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0022	498	1	0	0	0	0	1	copy fasta	AMZ1	chr7	2683202	2724683
AMZ1_chr7_2683202_2724683	0/0	a0023	498	1	0	0	1	0	0	copy fasta	AMZ1	chr7	2683202	2724683
AMZ2_chr17_68243043_68262155	0/1	a0001	360	326	81	67	129	13	35	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	1/0	a0002	360	102	4	15	62	5	15	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	a0003	360	5	5	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	a0004	360	2	0	0	2	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	a0005	307	1	1	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	a0006	360	1	0	0	1	0	0	copy fasta	AMZ2	chr17	68243043	68262155
AMZ2_chr17_68243043_68262155	0/0	a0007	360	1	1	0	0	0	0	copy fasta	AMZ2	chr17	68243043	68262155
ANAPC10_chr4_144989576_145103196	1/1	a0001	185	336	80	62	140	14	38	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC11_chr17_81886723_81905255	1/1	a0001	84	312	84	66	104	10	46	copy fasta	ANAPC11	chr17	81886723	81905255
ANAPC13_chr3_134472706_134490985	1/1	a0001	74	394	92	74	166	14	46	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC15_chr11_72104587_72117695	1/1	a0001	121	408	94	72	184	10	46	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC16_chr10_72211012_72240860	1/1	a0001	110	351	97	58	148	8	38	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	a0002	110	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC1_chr2_111762640_111889193	1/1	a0001	1944	358	83	69	159	14	31	copy fasta	ANAPC1	chr2	111762640	111889193