JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDM5B_chr1_202719495_202813421	0/0	a0008	1544	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5C_chrX_53187158_53230207	1/1	a0001	1560	236	70	30	107	5	22	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	a0002	1560	1	0	1	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	a0003	1560	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	a0004	99	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	a0005	1560	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	a0006	72	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5D_chrY_19698865_19749726	1/1	a0001	1539	120	17	20	60	5	16	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	a0002	1539	6	0	0	6	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	a0003	1539	2	0	0	2	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	a0004	1539	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	a0005	1539	1	1	0	0	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	a0006	375	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM6A_chrX_44868188_45117779	1/1	a0001	1453	145	52	29	40	6	16	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0002	1453	45	5	0	36	0	4	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0003	1454	3	3	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0004	1453	2	2	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0005	1453	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0006	561	1	0	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0007	1427	1	0	0	0	1	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	a0008	631	1	0	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6B_chr17_7829217_7859796	0/1	a0001	1645	160	35	30	58	15	21	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0002	1639	38	0	4	28	0	6	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0003	1646	20	3	9	6	0	2	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0004	1645	18	15	1	0	0	2	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0005	555	15	3	3	6	1	2	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0006	1645	13	0	1	11	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0007	1645	10	9	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0008	1640	10	0	0	9	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0009	360	10	1	2	5	0	2	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0010	1639	9	0	9	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0011	1646	8	0	0	8	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0012	1644	6	4	0	1	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0013	1645	6	5	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0014	1645	5	0	1	1	0	3	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0015	1644	4	4	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0016	356	4	0	2	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	1/0	a0017	1643	3	1	0	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0018	1645	3	0	2	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0019	556	3	0	2	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0020	1645	2	0	2	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0021	1640	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0022	1641	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0023	974	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0024	1645	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0025	1646	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0026	1647	2	1	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0027	1640	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0028	1643	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0029	554	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796