JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDM6B_chr17_7829217_7859796	0/0	a0030	359	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0031	555	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0032	555	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0033	1646	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0034	1650	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0035	1643	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0036	1643	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0037	1639	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0038	356	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0039	551	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0040	357	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0041	973	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0042	1645	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0043	360	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0044	1645	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0045	1645	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0046	974	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0047	1646	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0048	555	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0049	1643	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0050	1646	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0051	361	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0052	361	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0053	1648	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0054	1649	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	a0055	1644	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM7A_chr7_140079746_140181983	1/1	a0001	941	212	46	36	100	9	19	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0002	941	121	37	24	44	3	13	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0003	941	3	0	0	3	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0004	941	2	0	0	0	0	2	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0005	941	2	2	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0006	941	2	0	0	2	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0007	941	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	a0008	941	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM8_chr16_27198526_27226768	1/1	a0001	416	398	94	73	171	12	46	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	a0002	416	1	1	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	a0003	416	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	a0004	416	1	1	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	a0005	416	1	0	1	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDR_chr4_55073481_55130595	1/0	a0001	1356	248	59	49	98	10	31	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/1	a0002	1356	77	4	12	48	3	9	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0003	1356	32	23	4	2	0	3	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0004	1356	25	0	5	19	1	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0005	1356	3	2	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0006	1356	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0007	1356	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0008	1356	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0009	1356	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0010	1356	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0011	1356	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595