JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KDR_chr4_55073481_55130595	0/0	a0012	1356	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0013	1356	1	0	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0014	1356	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0015	1356	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	a0016	1356	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDSR_chr18_63322726_63372206	1/1	a0001	332	405	84	84	181	12	42	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	a0002	332	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KEAP1_chr19_10481125_10508356	1/1	a0001	624	386	95	68	164	13	44	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0002	624	1	0	0	0	1	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0003	425	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0004	624	1	0	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0005	624	1	1	0	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0006	624	1	0	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	a0007	624	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEL_chr7_142936114_142967363	0/1	a0001	732	231	80	55	54	13	28	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0002	732	12	12	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0003	732	3	0	2	0	1	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0004	732	2	0	0	2	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0005	732	1	0	1	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0006	732	1	1	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0007	732	1	1	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0008	732	1	0	0	1	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	a0009	732	1	0	0	1	0	0	copy fasta	KEL	chr7	142936114	142967363
KERA_chr12_91045491_91063024	1/1	a0001	352	405	98	84	169	14	38	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	a0002	352	2	0	0	2	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	a0003	352	1	0	0	1	0	0	copy fasta	KERA	chr12	91045491	91063024
KHDC1L_chr6_73218544_73230496	1/1	a0001	128	415	93	70	194	12	44	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	a0002	128	2	2	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	a0003	128	2	0	0	2	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	a0004	29	1	1	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1_chr6_73236314_73268196	1/1	a0001	164	326	98	54	126	10	36	copy fasta	KHDC1	chr6	73236314	73268196
KHDC3L_chr6_73357658_73369171	1/1	a0001	217	221	64	42	97	1	15	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	a0002	217	188	27	32	98	10	21	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	a0003	217	22	1	4	6	7	4	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	a0004	194	2	0	0	2	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	a0005	217	1	0	0	1	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC4_chr1_155908045_155939413	1/1	a0001	614	325	94	52	133	10	34	copy fasta	KHDC4	chr1	155908045	155939413
KHDC4_chr1_155908045_155939413	0/0	a0002	614	1	0	0	1	0	0	copy fasta	KHDC4	chr1	155908045	155939413
KHDRBS1_chr1_32008868_32048877	1/1	a0001	443	271	73	50	108	12	26	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	a0002	443	1	1	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS2_chr6_61674961_62291225	1/1	a0001	349	237	75	24	96	13	27	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	a0002	349	2	0	0	0	0	2	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	a0003	349	2	1	0	0	1	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	a0004	349	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	a0005	349	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	a0006	349	1	0	0	0	0	1	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS3_chr8_135452456_135652610	1/0	a0001	346	339	89	68	136	12	33	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/1	a0002	346	1	0	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	a0003	346	1	0	0	0	0	1	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	a0004	346	1	1	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610