JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KHK_chr2_27081772_27105762	1/1	a0001	298	198	57	36	72	9	22	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	a0002	298	121	33	32	40	5	11	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	a0003	298	2	0	0	0	2	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	a0004	298	1	0	0	0	0	1	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	a0005	298	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	a0006	298	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHNYN_chr14_24424954_24446843	0/1	a0001	678	239	77	32	106	7	16	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	a0002	678	201	4	46	115	10	26	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	1/0	a0003	678	18	8	1	4	0	4	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	a0004	678	1	0	0	0	1	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	a0005	678	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	a0006	678	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	a0007	678	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHSRP_chr19_6408102_6429811	1/1	a0001	747	382	86	78	150	18	48	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	a0002	333	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	a0003	747	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	a0004	747	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	a0005	747	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KIAA0040_chr1_175151986_175197776	1/0	a0001	99	192	44	37	83	4	23	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/1	a0002	96	112	42	22	31	5	11	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	a0003	100	71	1	2	58	3	7	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	a0004	99	8	3	0	5	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	a0005	102	7	5	0	1	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	a0006	101	3	0	1	2	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	a0007	96	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0232_chr4_6777727_6889164	1/1	a0001	1395	336	86	44	153	14	37	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0002	1395	7	0	4	3	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0003	1395	6	1	1	0	0	4	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0004	1395	5	0	1	4	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0005	1395	2	0	2	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0006	1395	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0007	1395	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0008	1395	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0009	1395	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0010	1395	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	a0011	1395	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0319L_chr1_35428492_35562403	1/1	a0001	1049	310	93	51	135	8	21	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0002	1049	4	0	0	4	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0003	1049	3	2	1	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0004	1049	3	0	0	3	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0005	1049	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0006	1049	1	0	0	0	0	1	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0007	1049	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	a0008	1049	1	1	0	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319_chr6_24539107_24651191	0/0	a0001	1072	182	51	30	78	5	18	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/1	a0002	1072	35	0	8	17	5	4	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	1/0	a0003	1072	19	4	5	5	2	2	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0004	1072	13	4	3	3	0	3	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0005	1072	12	11	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0006	1072	7	0	4	0	0	3	copy fasta	KIAA0319	chr6	24539107	24651191