JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIAA0319_chr6_24539107_24651191	0/0	a0007	1072	6	5	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0008	1072	5	5	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0009	1072	3	3	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0010	1072	2	2	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0011	1072	2	0	1	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0012	1072	2	2	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0013	1072	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0014	1072	1	0	0	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0015	1072	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0016	1072	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0017	1072	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0018	1072	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0019	1072	1	0	0	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0020	1072	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0021	1072	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0022	1072	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0023	1072	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	a0024	1072	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0408_chr6_127433406_127464389	1/0	a0001	694	115	33	10	47	3	21	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/1	a0002	694	111	46	32	10	5	17	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0003	694	107	3	26	73	1	4	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0004	694	5	0	0	4	1	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0005	694	3	3	0	0	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0006	694	2	0	0	0	0	2	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0007	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0008	694	1	1	0	0	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0009	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0010	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0011	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0012	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	a0013	694	1	0	0	1	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0513_chr16_85022795_85099218	1/1	a0001	411	347	85	55	152	17	36	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	a0002	411	40	2	8	26	1	3	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	a0003	411	1	1	0	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	a0004	411	1	0	1	0	0	0	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0513_chr16_85022795_85099218	0/0	a0005	411	1	0	0	0	0	1	copy fasta	KIAA0513	chr16	85022795	85099218
KIAA0586_chr14_58422719_58556297	0/1	a0001	1548	260	64	45	114	10	26	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0002	1548	13	0	2	11	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	1/0	a0003	1548	3	2	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0004	1548	3	0	0	3	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0005	1548	3	3	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0006	1548	3	0	0	3	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0007	1548	2	2	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0008	1548	2	0	0	0	0	2	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0009	1548	1	0	1	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0010	1548	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0011	1548	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0012	1548	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0013	1548	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0014	1548	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297