JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIAA0586_chr14_58422719_58556297	0/0	a0015	1548	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0016	1548	1	1	0	0	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0017	1548	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0018	1548	1	0	0	0	0	1	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0586_chr14_58422719_58556297	0/0	a0019	1548	1	0	0	1	0	0	copy fasta	KIAA0586	chr14	58422719	58556297
KIAA0753_chr17_6573147_6645711	1/0	a0001	967	117	21	21	57	4	13	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0002	967	105	22	18	55	3	7	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/1	a0003	967	92	3	16	58	5	9	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0004	967	18	17	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0005	967	13	8	2	0	0	3	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0006	967	8	7	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0007	967	6	5	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0008	967	5	5	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0009	259	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0010	967	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0011	967	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0012	967	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0013	967	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	a0014	967	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0825_chr5_94145851_94623604	0/0	a0001	1275	37	17	8	9	0	3	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	a0002	1275	8	8	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	a0003	1275	7	3	2	0	0	2	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	a0004	1275	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	a0005	1275	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0930_chr22_45187244_45245894	1/1	a0001	404	396	92	74	163	18	47	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	a0002	404	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	a0003	404	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA1143_chr3_44743744_44766619	1/1	a0001	154	309	94	66	99	15	33	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	a0002	154	18	0	10	7	1	0	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1143_chr3_44743744_44766619	0/0	a0003	154	1	0	0	0	0	1	copy fasta	KIAA1143	chr3	44743744	44766619
KIAA1191_chr5_176341062_176366764	1/1	a0001	305	401	95	74	178	10	42	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	a0002	305	2	0	0	0	0	2	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	a0003	305	2	2	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1191_chr5_176341062_176366764	0/0	a0004	305	1	1	0	0	0	0	copy fasta	KIAA1191	chr5	176341062	176366764
KIAA1210_chrX_119073635_119132812	1/1	a0001	1533	108	17	21	42	8	18	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0002	1533	88	24	8	52	0	4	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0003	1533	10	10	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0004	1533	9	9	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0005	1533	7	0	2	5	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0006	1533	7	0	0	7	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0007	1533	3	0	0	0	3	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0008	1533	3	0	3	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0009	1533	2	0	0	2	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0010	1533	2	0	0	0	2	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0011	1533	2	2	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0012	1533	2	2	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0013	1533	2	2	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0014	1533	1	0	1	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0015	1533	1	0	0	1	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0016	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812