JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIAA1210_chrX_119073635_119132812	0/0	a0017	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0018	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0019	1533	1	0	1	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0020	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0021	1533	1	0	1	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0022	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0023	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0024	1533	1	0	0	0	0	1	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0025	1533	1	0	1	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0026	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0027	1533	1	0	1	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0028	1533	1	1	0	0	0	0	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1210_chrX_119073635_119132812	0/0	a0029	1533	1	0	0	0	0	1	copy fasta	KIAA1210	chrX	119073635	119132812
KIAA1217_chr10_24204138_24552843	1/0	a0001	1943	140	38	17	70	1	13	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0002	1943	37	13	8	9	0	7	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0003	1943	18	11	3	2	0	2	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0004	1943	11	0	9	0	0	2	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0005	1943	6	6	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0006	1943	3	0	0	3	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0007	1943	3	2	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0008	1943	3	3	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0009	1943	2	2	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0010	1943	2	0	0	2	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0011	1943	2	0	0	2	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/1	a0012	1943	2	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0013	1943	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0014	1943	1	0	0	0	1	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0015	1943	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0016	1943	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0017	1943	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0018	1943	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0019	1943	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0020	1943	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0021	1943	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0022	1943	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	a0023	1943	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1328_chr18_36824127_37230334	1/1	a0001	577	180	59	42	52	11	14	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0002	577	8	8	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0003	577	6	0	1	0	1	4	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0004	577	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0005	577	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0006	577	1	0	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0007	577	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0008	577	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	a0009	577	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1522_chr1_32736830_32779970	1/0	a0001	1094	279	55	50	119	14	40	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	a0002	1094	34	18	11	0	1	4	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	a0003	1094	8	3	0	5	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/1	a0004	1094	4	2	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	a0005	1094	4	4	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970