Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANAPC1_chr2_111762640_111889193	0/0	a0002	1944	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0003	1944	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0004	1944	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0005	1944	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0006	1944	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0007	1944	1	0	0	0	0	1	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0008	1944	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0009	1944	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0010	1944	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0011	1944	1	1	0	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0012	1944	1	0	1	0	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC1_chr2_111762640_111889193	0/0	a0013	1944	1	0	0	1	0	0	copy fasta	ANAPC1	chr2	111762640	111889193
ANAPC2_chr9_137169784_137193560	1/1	a0001	822	410	94	74	179	16	45	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	a0002	822	2	0	0	2	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	a0003	822	1	1	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	a0004	822	1	0	0	1	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	a0005	822	1	1	0	0	0	0	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC2_chr9_137169784_137193560	0/0	a0006	822	1	0	0	0	0	1	copy fasta	ANAPC2	chr9	137169784	137193560
ANAPC4_chr4_25372263_25423498	1/0	a0001	808	440	98	77	208	10	46	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/1	a0002	808	14	0	7	0	4	2	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC4_chr4_25372263_25423498	0/0	a0003	808	2	2	0	0	0	0	copy fasta	ANAPC4	chr4	25372263	25423498
ANAPC5_chr12_121303245_121357411	1/1	a0001	755	277	88	55	98	6	28	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC5_chr12_121303245_121357411	0/0	a0002	755	1	0	1	0	0	0	copy fasta	ANAPC5	chr12	121303245	121357411
ANAPC7_chr12_110367900_110408708	1/1	a0001	565	296	87	63	92	18	34	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	a0002	561	1	1	0	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANAPC7_chr12_110367900_110408708	0/0	a0003	565	1	0	1	0	0	0	copy fasta	ANAPC7	chr12	110367900	110408708
ANGEL1_chr14_76781009_76817882	1/1	a0001	670	296	77	52	123	10	32	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0002	670	66	8	7	45	2	4	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0003	670	15	4	6	0	1	4	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0004	670	8	1	1	0	3	3	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0005	670	2	0	0	2	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0006	670	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0007	670	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0008	670	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0009	670	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0010	670	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0011	670	1	0	0	1	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0012	670	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0013	670	1	1	0	0	0	0	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL1_chr14_76781009_76817882	0/0	a0014	19	1	0	0	0	0	1	copy fasta	ANGEL1	chr14	76781009	76817882
ANGEL2_chr1_212987182_213020867	1/1	a0001	544	377	89	71	169	12	34	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0002	544	6	6	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0003	544	3	0	0	3	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0004	544	2	2	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0005	544	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0006	544	1	1	0	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0007	544	1	0	1	0	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGEL2_chr1_212987182_213020867	0/0	a0008	544	1	0	0	1	0	0	copy fasta	ANGEL2	chr1	212987182	213020867
ANGPT1_chr8_107244482_107502918	1/1	a0001	498	289	84	53	102	12	36	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	a0002	498	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918