JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIAA1755_chr20_38205503_38265735	0/0	a0008	1200	10	0	0	10	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/1	a0009	1200	7	0	1	2	1	2	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0010	1200	7	4	0	0	0	3	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0011	1200	5	0	0	5	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0012	1200	2	2	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0013	1200	2	2	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0014	1200	2	0	0	0	0	2	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0015	1200	2	2	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0016	1200	2	2	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0017	1200	1	0	0	0	0	1	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0018	1200	1	0	0	1	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0019	1200	1	0	0	0	0	1	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0020	1200	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0021	1200	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0022	1200	1	0	0	0	0	1	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0023	1069	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0024	1200	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0025	1200	1	0	0	1	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0026	1200	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0027	1069	1	1	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0028	1200	1	0	0	1	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	a0029	1200	1	0	1	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1958_chr9_112481827_112674397	1/1	a0001	716	302	64	54	142	12	28	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	a0002	716	2	2	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	a0003	716	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	a0004	716	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	a0005	716	1	1	0	0	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA1958_chr9_112481827_112674397	0/0	a0006	716	1	0	0	1	0	0	copy fasta	KIAA1958	chr9	112481827	112674397
KIAA2012_chr2_202068255_202210188	0/0	a0001	1181	82	20	15	29	3	15	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0002	1181	65	12	7	41	0	5	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0003	1181	32	10	12	1	3	6	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0004	1181	32	2	7	21	2	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0005	1181	27	0	5	17	0	5	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/1	a0006	1181	15	1	9	1	2	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0007	1181	8	8	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0008	1181	6	0	5	0	1	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0009	1181	4	2	0	0	2	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0010	1181	4	4	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0011	1181	4	0	0	4	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0012	1181	4	0	2	2	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0013	1181	3	3	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0014	1181	3	1	1	0	0	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0015	1181	2	2	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	1/0	a0016	1181	2	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0017	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0018	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0019	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0020	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0021	1181	1	0	1	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0022	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188