JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIAA2012_chr2_202068255_202210188	0/0	a0023	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0024	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0025	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0026	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0027	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0028	1181	1	0	0	0	1	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0029	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0030	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0031	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0032	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0033	1181	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0034	1181	1	0	0	0	0	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	a0035	1181	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2013_chr1_11914591_11931427	1/1	a0001	634	435	93	76	201	18	45	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	a0002	634	6	0	0	5	0	1	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	a0003	634	2	2	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	a0004	634	1	1	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2026_chr9_5914022_6013482	1/0	a0001	2103	328	77	61	146	8	35	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/1	a0002	2103	7	1	1	0	2	2	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0003	2103	5	0	0	5	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0004	2103	5	0	0	5	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0005	2103	5	0	5	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0006	2103	3	0	0	3	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0007	2103	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0008	2103	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0009	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0010	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0011	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0012	2103	1	0	1	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0013	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0014	2103	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0015	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0016	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0017	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0018	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0019	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0020	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0021	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0022	2103	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0023	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0024	2103	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	a0025	2096	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KICS2_chr12_64186080_64227296	0/1	a0001	445	401	84	76	180	18	42	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	a0002	445	3	3	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	a0003	445	2	2	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	1/0	a0004	445	1	0	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KICS2_chr12_64186080_64227296	0/0	a0005	445	1	1	0	0	0	0	copy fasta	KICS2	chr12	64186080	64227296
KIDINS220_chr2_8723858_8842613	1/1	a0001	1771	224	61	40	83	15	23	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0002	1771	96	27	17	40	3	9	copy fasta	KIDINS220	chr2	8723858	8842613
KIDINS220_chr2_8723858_8842613	0/0	a0003	1771	4	4	0	0	0	0	copy fasta	KIDINS220	chr2	8723858	8842613