JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF13B_chr8_29062278_29268070	0/0	a0005	1826	2	2	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0006	1826	2	0	0	0	0	2	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0007	1826	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0008	1826	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0009	1826	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0010	1826	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0011	1826	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0012	1826	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0013	1826	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0014	1826	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0015	1826	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0016	1826	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	a0017	1826	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF14_chr1_200546500_200625751	1/0	a0001	1648	294	76	50	130	10	27	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/1	a0002	1648	76	5	17	42	4	7	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0003	1648	8	7	1	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0004	1648	4	4	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0005	1648	2	0	0	0	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0006	1648	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0007	1648	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0008	1648	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0009	1648	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0010	1648	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	a0011	1648	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF15_chr3_44756794_44858256	1/0	a0001	1388	101	48	18	23	3	8	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/1	a0002	1388	90	17	29	23	6	14	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0003	1388	11	2	7	0	2	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0004	1388	9	9	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0005	1388	7	7	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0006	1388	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0007	1388	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0008	1388	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0009	1388	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0010	1388	1	0	0	1	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0011	1388	1	0	1	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0012	1388	1	0	0	0	1	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0013	1388	1	1	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0014	1388	1	0	1	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	a0015	1388	1	0	0	1	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF16B_chr20_16267104_16578448	0/1	a0001	1317	180	49	38	70	4	18	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	1/0	a0002	1317	30	13	8	1	3	4	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0003	1317	14	6	0	7	0	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0004	1317	12	9	1	0	1	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0005	1317	5	0	0	5	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0006	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0007	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0008	1317	1	0	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0009	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0010	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0011	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448