JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF16B_chr20_16267104_16578448	0/0	a0012	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0013	1317	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	a0014	1317	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF17_chr1_20659014_20723007	0/1	a0001	1028	107	10	31	46	7	12	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0002	1028	70	3	14	47	1	5	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0003	1028	62	27	15	13	3	4	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	1/0	a0004	1028	39	11	4	17	1	5	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0005	1028	32	4	3	17	1	7	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0006	1028	21	3	0	14	0	4	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0007	1028	19	2	2	13	0	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0008	1028	17	16	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0009	1028	8	0	0	5	1	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0010	1028	4	3	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0011	1028	3	1	2	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0012	1028	2	2	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0013	1028	2	1	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0014	1028	2	1	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0015	1028	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0016	1028	1	0	0	0	1	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0017	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0018	365	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0019	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0020	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0021	1028	1	0	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0022	1028	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0023	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0024	1028	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0025	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0026	1028	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0027	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0028	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0029	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0030	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0031	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0032	1028	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0033	1028	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0034	1028	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0035	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0036	1028	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0037	1028	1	0	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0038	1028	1	0	0	0	1	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0039	1028	1	0	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	a0040	1028	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF18A_chr11_28015619_28113156	1/1	a0001	898	179	29	30	91	3	24	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0002	898	74	10	2	53	0	9	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0003	898	74	40	6	22	1	5	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0004	898	8	0	0	8	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0005	898	3	3	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0006	898	3	0	0	3	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0007	898	1	1	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156