JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF18A_chr11_28015619_28113156	0/0	a0008	898	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0009	898	1	1	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0010	898	1	0	1	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	a0011	898	1	0	1	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18B_chr17_44919711_44952773	1/0	a0001	852	380	83	62	179	15	40	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0002	852	5	0	2	0	0	3	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0003	852	3	0	0	3	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0004	852	3	3	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0005	852	2	0	0	2	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0006	852	2	0	1	0	0	1	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0007	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0008	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0009	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0010	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0011	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0012	852	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/1	a0013	852	1	0	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0014	852	1	0	1	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0015	852	1	0	0	1	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0016	852	1	0	0	1	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	a0017	852	1	0	0	0	1	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF19_chr17_74321226_74360820	1/0	a0001	998	150	46	22	61	5	15	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0002	998	119	5	25	65	6	18	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0003	998	42	5	3	32	1	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/1	a0004	998	37	4	14	6	4	8	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0005	998	15	14	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0006	998	6	0	0	6	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0007	998	5	5	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0008	998	5	5	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0009	998	4	4	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0010	998	3	2	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0011	998	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0012	998	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0013	998	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0014	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0015	998	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0016	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0017	998	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0018	998	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0019	998	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0020	998	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0021	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0022	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0023	973	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0024	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0025	998	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0026	998	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0027	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0028	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0029	998	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820