JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF19_chr17_74321226_74360820	0/0	a0030	998	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0031	998	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0032	998	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	a0033	998	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF1A_chr2_240708767_240825219	0/0	a0001	1790	217	74	33	84	8	18	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	1/0	a0002	1791	94	11	25	32	7	18	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0003	1792	6	4	0	2	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/1	a0004	1789	3	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0005	1790	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0006	1790	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0007	1790	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0008	1790	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0009	1790	1	0	0	0	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0010	1790	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0011	1791	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0012	1791	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0013	1792	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	a0014	1790	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1B_chr1_10205570_10386603	1/1	a0001	1816	260	79	53	83	10	33	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0002	1816	27	6	7	13	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0003	1816	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0004	1816	3	0	0	3	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0005	1816	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0006	1816	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0007	1816	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0008	1816	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0009	1816	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0010	1816	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	a0011	1816	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1C_chr17_4992950_5033401	1/1	a0001	1103	334	75	71	141	12	33	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0002	1103	12	12	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0003	1103	6	2	0	4	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0004	1103	4	0	0	4	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0005	1103	2	2	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0006	1103	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0007	1103	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0008	1103	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0009	1103	1	0	1	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0010	1103	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0011	1103	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0012	1103	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0013	1103	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0014	1103	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	a0015	1103	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF20A_chr5_138174112_138192723	1/1	a0001	890	397	91	79	167	15	43	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0002	890	3	0	3	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0003	890	2	0	0	2	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0004	890	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0005	890	1	0	0	0	1	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0006	890	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723