JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF20A_chr5_138174112_138192723	0/0	a0007	890	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0008	890	1	0	0	0	0	1	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0009	890	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0010	890	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	a0011	890	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20B_chr10_89696590_89779934	0/0	a0001	1822	117	17	14	53	4	29	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0002	1820	70	2	12	49	1	6	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0003	1820	49	0	9	40	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	1/0	a0004	1820	42	15	12	7	6	1	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/1	a0005	1820	24	1	12	0	4	6	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0006	1820	18	10	4	1	0	3	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0007	1822	13	12	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0008	1820	9	8	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0009	1820	8	7	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0010	1821	8	8	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0011	1820	3	0	3	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0012	1820	2	2	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0013	1822	2	2	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0014	1820	2	1	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0015	1820	1	0	0	0	0	1	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0016	1820	1	0	0	0	1	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0017	1820	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0018	1820	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0019	1820	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0020	1820	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0021	1822	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0022	1822	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0023	1822	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0024	1822	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0025	1822	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0026	1820	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0027	1820	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0028	1820	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	a0029	1820	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF21A_chr12_39288228_39448120	1/1	a0001	1674	266	75	44	105	8	32	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0002	1674	24	0	3	19	0	2	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0003	1674	2	0	0	0	0	2	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0004	1674	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0005	1674	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0006	1674	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0007	1674	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0008	1674	1	0	1	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	a0009	1674	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21B_chr1_200964390_201028714	1/1	a0001	1623	337	92	56	138	14	35	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	a0002	1623	2	0	1	0	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	a0003	1623	2	0	1	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	a0004	1623	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF22_chr16_29785751_29810384	1/1	a0001	665	189	50	45	63	14	15	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0002	665	11	11	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0003	665	1	0	0	0	0	1	copy fasta	KIF22	chr16	29785751	29810384