JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF22_chr16_29785751_29810384	0/0	a0004	665	1	0	1	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0005	665	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0006	665	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0007	665	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	a0008	665	1	1	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF23_chr15_69409349_69453425	1/1	a0001	974	315	84	37	169	8	15	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0002	974	4	3	1	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0003	974	2	0	0	2	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0004	974	2	0	2	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0005	974	1	0	0	1	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0006	974	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0007	974	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0008	974	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	a0009	974	1	0	0	0	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF24_chr9_34247380_34334268	1/0	a0001	1368	203	48	24	114	2	14	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/1	a0002	1368	73	3	18	31	7	13	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0003	1368	23	5	11	3	1	3	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0004	1368	20	1	6	7	2	4	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0005	1368	18	1	11	0	2	4	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0006	1368	14	0	0	13	1	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0007	1368	11	10	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0008	1368	5	5	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0009	1368	5	0	0	5	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0010	1368	4	4	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0011	1368	2	2	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0012	1368	2	0	0	2	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0013	1368	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0014	1368	1	0	0	0	1	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0015	1368	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0016	1368	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0017	1368	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0018	1368	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0019	1368	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0020	1368	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0021	1368	1	0	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	a0022	1368	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF25_chr6_167992671_168050091	1/0	a0001	384	253	58	63	91	16	24	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0002	384	53	1	4	38	2	8	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0003	384	35	3	6	21	0	5	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0004	384	8	8	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0005	384	5	5	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0006	384	3	2	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0007	384	3	3	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0008	384	2	0	0	0	0	2	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0009	384	2	1	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0010	384	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0011	8	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0012	384	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0013	384	1	0	0	0	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0014	384	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091