Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANGPT1_chr8_107244482_107502918	0/0	a0003	498	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT1_chr8_107244482_107502918	0/0	a0004	498	1	0	1	0	0	0	copy fasta	ANGPT1	chr8	107244482	107502918
ANGPT2_chr8_6494632_6568245	1/1	a0001	495	328	86	55	132	14	39	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0002	495	2	0	0	2	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0003	495	1	0	0	0	0	1	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0004	495	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0005	495	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0006	495	1	1	0	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0007	495	1	0	1	0	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT2_chr8_6494632_6568245	0/0	a0008	495	1	0	0	1	0	0	copy fasta	ANGPT2	chr8	6494632	6568245
ANGPT4_chr20_864900_921334	1/1	a0001	503	400	75	72	194	10	47	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0002	503	10	6	3	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0003	503	9	9	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0004	503	3	3	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0005	503	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0006	503	1	0	0	0	0	1	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0007	503	1	0	1	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0008	503	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0009	503	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0010	503	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0011	503	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0012	503	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0013	503	1	0	0	1	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPT4_chr20_864900_921334	0/0	a0014	503	1	1	0	0	0	0	copy fasta	ANGPT4	chr20	864900	921334
ANGPTL1_chr1_178844535_178876077	1/1	a0001	491	420	95	78	193	12	40	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	a0002	491	2	0	0	2	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	a0003	491	1	0	0	1	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL1_chr1_178844535_178876077	0/0	a0004	491	1	1	0	0	0	0	copy fasta	ANGPTL1	chr1	178844535	178876077
ANGPTL2_chr9_127082348_127127635	1/1	a0001	493	369	91	68	156	18	34	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	a0002	493	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	a0003	493	1	0	0	1	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL2_chr9_127082348_127127635	0/0	a0004	493	1	1	0	0	0	0	copy fasta	ANGPTL2	chr9	127082348	127127635
ANGPTL3_chr1_62592520_62611313	1/1	a0001	460	349	71	70	152	15	39	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	a0002	460	12	11	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	a0003	460	2	0	0	2	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	a0004	460	1	0	0	0	1	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	a0005	460	1	0	1	0	0	0	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL3_chr1_62592520_62611313	0/0	a0006	460	1	0	0	0	0	1	copy fasta	ANGPTL3	chr1	62592520	62611313
ANGPTL4_chr19_8359155_8379370	1/1	a0001	406	307	61	59	137	12	36	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0002	406	70	23	11	21	4	11	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0003	406	12	9	1	1	0	1	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0004	406	6	0	0	6	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0005	406	4	1	3	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0006	406	3	0	3	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0007	406	2	2	0	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0008	406	1	0	0	1	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0009	406	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0010	349	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL4_chr19_8359155_8379370	0/0	a0011	406	1	0	1	0	0	0	copy fasta	ANGPTL4	chr19	8359155	8379370
ANGPTL5_chr11_101885674_101921522	0/1	a0001	388	398	85	71	184	18	39	copy fasta	ANGPTL5	chr11	101885674	101921522