JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF25_chr6_167992671_168050091	0/0	a0015	384	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0016	384	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0017	384	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0018	384	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	a0019	384	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF26A_chr14_104133587_104185894	1/1	a0001	1882	278	63	61	104	14	34	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0002	1568	16	2	5	6	1	2	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0003	1882	8	8	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0004	1882	7	0	2	5	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0005	1882	6	1	3	0	1	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0006	1882	5	5	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0007	1882	5	0	0	0	0	5	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0008	1882	5	4	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0009	1882	3	0	2	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0010	1882	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0011	1882	2	0	1	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0012	1568	2	0	1	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0013	1568	2	0	0	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0014	1882	2	2	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0015	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0016	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0017	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0018	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0019	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0020	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0021	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0022	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0023	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0024	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0025	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0026	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0027	1882	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0028	1864	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0029	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0030	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0031	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0032	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0033	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0034	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0035	1568	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0036	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0037	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0038	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0039	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0040	1882	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0041	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0042	1882	1	0	0	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0043	1882	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0044	1882	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	a0045	1882	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894