JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF26B_chr1_245149985_245714432	0/0	a0001	2108	108	52	27	17	1	11	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0002	2108	13	12	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0003	2108	13	1	2	8	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0004	2108	4	3	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0005	2108	3	1	1	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0006	2108	2	0	1	0	1	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0007	2108	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0008	2108	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0009	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0010	2108	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0011	2108	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0012	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0013	2108	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0014	2108	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0015	2108	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0016	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0017	2108	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0018	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0019	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0020	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0021	2108	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	a0022	2108	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF27_chr9_83829099_83926432	1/1	a0001	1401	209	51	22	113	4	17	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0002	1401	52	17	1	23	5	6	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0003	1401	40	4	10	16	3	7	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0004	1401	33	11	13	0	3	6	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0005	1401	2	1	1	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0006	1401	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0007	1401	1	0	1	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0008	1401	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0009	1401	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0010	1401	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0011	1401	1	0	0	0	1	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0012	1401	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0013	1401	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0014	1401	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	a0015	1401	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF2A_chr5_62301206_62396025	1/1	a0001	744	363	83	60	172	16	30	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	a0002	744	4	4	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	a0003	744	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	a0004	744	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	a0005	744	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2B_chr17_53817927_53830193	0/0	a0001	673	200	35	25	120	6	14	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	1/0	a0002	673	88	8	18	42	3	16	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/1	a0003	673	87	5	29	38	5	9	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0004	673	20	14	3	0	3	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0005	673	19	18	1	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0006	673	7	7	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0007	673	3	3	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0008	673	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193