JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF2B_chr17_53817927_53830193	0/0	a0009	673	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0010	535	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0011	673	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0012	673	1	0	0	0	1	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	a0013	673	1	0	0	0	0	1	copy fasta	KIF2B	chr17	53817927	53830193
KIF2C_chr1_44734837_44772767	1/0	a0001	725	282	71	48	119	12	31	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/1	a0002	725	82	14	15	40	4	8	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0003	725	2	0	0	2	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0004	725	2	0	0	2	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0005	725	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0006	725	1	0	0	0	0	1	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0007	725	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0008	725	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0009	725	1	0	1	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	a0010	725	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF3A_chr5_132687631_132742546	0/0	a0001	726	189	54	22	108	3	2	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	1/1	a0002	726	156	38	38	47	9	22	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	a0003	726	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3B_chr20_32272651_32340011	1/1	a0001	747	240	54	54	84	12	34	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	a0002	747	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	a0003	747	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3C_chr2_25921598_25987497	1/1	a0001	793	236	83	64	42	7	38	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	a0002	793	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	a0003	793	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	a0004	793	1	0	0	0	1	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF4A_chrX_70285104_70425886	1/1	a0001	1232	222	40	44	100	9	27	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	a0002	1232	23	19	3	0	0	1	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	a0003	1232	11	0	0	11	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	a0004	1232	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	a0005	1232	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	a0006	1232	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4B_chr5_155008755_155023141	1/1	a0001	1234	155	8	25	104	6	10	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0002	1234	153	51	34	36	10	22	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0003	1234	44	0	4	31	2	7	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0004	1234	21	17	4	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0005	1234	11	4	1	6	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0006	1234	10	7	2	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0007	1234	5	4	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0008	1234	4	4	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0009	1234	4	0	0	4	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0010	1234	2	0	0	2	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0011	144	1	1	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0012	1234	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0013	1234	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0014	1234	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0015	851	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0016	1234	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0017	1234	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0018	1234	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0019	1234	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141