JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF4B_chr5_155008755_155023141	0/0	a0020	1234	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	a0021	1234	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF5A_chr12_57545044_57591633	1/1	a0001	1032	360	90	65	154	14	35	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	a0002	1032	1	0	0	0	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	a0003	1032	1	0	1	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5B_chr10_32004015_32061425	1/1	a0001	963	360	95	66	147	14	36	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	a0002	963	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	a0003	963	1	0	0	1	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	a0004	963	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	a0005	963	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5C_chr2_148870227_149031759	1/1	a0001	957	175	82	18	55	2	16	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	a0002	957	3	0	0	3	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF6_chr6_39324990_39730408	0/1	a0001	814	87	52	11	12	2	9	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	1/0	a0002	814	47	6	16	13	4	7	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0003	814	25	6	0	14	0	5	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0004	814	7	0	0	6	0	1	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0005	814	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0006	814	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0007	814	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0008	814	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0009	814	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	a0010	814	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF7_chr15_89622977_89660467	0/1	a0001	1343	124	29	25	45	9	15	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0002	1343	94	2	19	55	4	14	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	1/0	a0003	1343	65	3	12	39	3	7	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0004	1343	54	37	7	7	1	2	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0005	1343	8	0	0	8	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0006	1343	4	4	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0007	1343	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0008	1343	3	3	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0009	1343	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0010	1343	3	3	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0011	1343	3	1	2	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0012	1343	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0013	1343	2	0	0	2	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0014	1343	2	0	0	0	0	2	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0015	1343	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0016	1343	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0017	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0018	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0019	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0020	1343	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0021	1343	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0022	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0023	1343	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0024	1343	1	0	0	0	1	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0025	1343	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0026	1343	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0027	1343	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0028	1343	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467