JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIF7_chr15_89622977_89660467	0/0	a0029	1343	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0030	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0031	1343	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0032	1343	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	a0033	1343	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF9_chr3_47222998_47287799	1/0	a0001	790	165	41	28	70	6	19	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/1	a0002	790	162	44	36	56	4	21	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0003	790	2	0	0	2	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0004	790	1	0	1	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0005	790	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0006	790	1	0	1	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0007	790	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	a0008	790	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIFAP3_chr1_169916329_170079695	1/1	a0001	792	370	91	58	162	12	45	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	a0002	792	1	1	0	0	0	0	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	a0003	792	1	0	0	0	0	1	copy fasta	KIFAP3	chr1	169916329	170079695
KIFBP_chr10_68983803_69021982	1/0	a0001	621	269	63	42	122	6	35	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/1	a0002	621	133	28	23	60	8	13	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	a0003	621	2	2	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	a0004	621	2	2	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	a0005	621	1	1	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	a0006	621	1	0	1	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFC1_chr6_33386823_33414896	0/1	a0001	673	329	87	69	134	10	28	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0002	673	5	0	1	1	0	3	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0003	673	3	3	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0004	673	3	2	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0005	673	3	1	1	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0006	673	2	2	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0007	673	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	a0008	673	1	0	1	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC2_chr8_144461337_144479202	1/0	a0001	791	371	88	70	162	11	39	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0002	791	4	0	0	4	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0003	791	4	0	0	4	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0004	791	4	0	3	0	1	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0005	791	2	2	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0006	791	2	0	0	2	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0007	791	2	0	2	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/1	a0008	791	1	0	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0009	791	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0010	791	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0011	791	1	0	1	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0012	791	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0013	791	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0014	791	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0015	725	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0016	791	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0017	791	1	0	0	0	0	1	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0018	791	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0019	791	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	a0020	791	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202