JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIFC3_chr16_57753217_57807491	1/1	a0001	826	386	86	68	174	16	40	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	a0002	823	4	4	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	a0003	826	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	a0004	826	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIN_chr10_7745962_7792993	1/1	a0001	393	422	81	68	218	16	37	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	a0002	393	2	0	0	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	a0003	393	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	a0004	393	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIR2DL1_chr19_54764793_54789322	0/1	a0001	348	236	46	31	129	5	24	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0002	348	40	2	5	26	2	5	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0003	348	29	11	4	5	2	7	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0004	348	8	7	1	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0005	348	4	4	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0006	348	3	0	0	3	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0007	348	3	3	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0008	348	2	2	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0009	348	2	2	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0010	348	2	1	0	0	0	1	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0011	348	2	0	0	2	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0012	3	1	0	0	0	1	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0013	348	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0014	348	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0015	348	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0016	348	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0017	348	1	0	0	0	0	1	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0018	348	1	0	1	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0019	348	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0020	348	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0021	348	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0022	348	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	a0023	348	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL3_chr19_54733513_54758052	0/0	a0000	0	8	5	0	3	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0001	341	220	25	26	147	6	16	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0002	341	34	2	5	21	1	5	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0003	341	16	14	1	0	0	1	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0004	341	7	6	0	0	1	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0005	341	5	0	0	5	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0006	341	4	0	1	3	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0007	341	3	0	0	3	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0008	341	2	0	0	2	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0009	341	2	2	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0010	341	2	2	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0011	304	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0012	341	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0013	148	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0014	341	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0015	341	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0016	341	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0017	341	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	a0018	341	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052