JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIR2DL3_chr19_54733513_54758052	0/0	a0019	341	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL4_chr19_54798610_54819517	0/1	a0001	342	180	43	27	90	0	19	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0002	342	127	11	23	75	9	9	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0003	342	58	15	13	13	7	10	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0004	342	30	3	0	24	1	2	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0005	342	7	7	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0006	342	4	2	2	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0007	342	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0008	342	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0009	342	1	0	0	0	1	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0010	342	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0011	342	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0012	342	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	a0013	342	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR3DL1_chr19_54811468_54835778	0/0	a0000	0	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/1	a0001	444	131	24	17	81	0	8	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0002	382	61	7	12	35	3	4	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0003	444	43	2	8	27	3	3	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0004	444	33	5	3	11	6	8	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0005	444	24	2	0	20	0	2	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0006	444	18	18	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0007	444	18	8	8	0	1	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0008	444	13	5	2	6	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0009	444	10	0	4	6	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0010	444	8	0	1	0	0	7	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0011	444	5	3	1	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0012	444	4	0	3	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0013	444	3	1	2	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0014	444	3	2	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0015	444	2	2	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0016	444	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0017	142	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0018	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0019	444	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0020	444	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0021	318	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0022	444	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0023	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0024	444	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0025	444	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0026	382	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0027	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0028	444	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0029	444	1	0	0	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0030	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0031	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0032	444	1	0	0	0	1	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	a0033	444	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL2_chr19_54845443_54872207	0/0	a0000	0	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0001	455	117	5	17	83	0	12	copy fasta	KIR3DL2	chr19	54845443	54872207