JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIR3DL2_chr19_54845443_54872207	0/0	a0002	455	77	39	13	5	6	14	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0003	455	66	3	16	32	5	10	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0004	455	41	5	3	29	3	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0005	455	31	5	1	23	1	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0006	455	21	3	3	9	0	6	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0007	455	13	11	2	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0008	455	9	3	5	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0009	455	8	1	6	0	1	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0010	455	8	3	2	1	0	2	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0011	455	5	5	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0012	455	4	0	4	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0013	455	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0014	455	3	0	1	2	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0015	455	3	1	0	0	2	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0016	455	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0017	455	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0018	455	3	3	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0019	455	3	3	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0020	455	2	2	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0021	455	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0022	455	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0023	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0024	455	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0025	455	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0026	455	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/1	a0027	455	1	0	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0028	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0029	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0030	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0031	455	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0032	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0033	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0034	455	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0035	455	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0036	455	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	a0037	455	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL3_chr19_54719442_54741632	0/0	a0001	410	95	2	4	88	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0002	410	76	12	20	40	1	3	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0003	410	46	0	6	37	1	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0004	410	27	9	8	1	1	8	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0005	410	24	11	8	0	4	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/1	a0006	410	23	4	6	1	3	8	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0007	410	21	3	4	7	0	7	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0008	410	18	4	5	8	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0009	410	17	0	6	9	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0010	410	17	17	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0011	410	14	0	1	11	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0012	410	11	4	1	5	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0013	410	10	7	1	0	1	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0014	410	8	7	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632