JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIR3DL3_chr19_54719442_54741632	0/0	a0015	410	7	0	1	6	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0016	410	5	4	1	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0017	410	4	0	2	0	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0018	410	4	0	1	0	2	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0019	410	3	3	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0020	410	3	0	0	3	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0021	410	3	0	0	0	1	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0022	410	2	2	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0023	410	2	0	0	2	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0024	410	2	1	1	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0025	410	2	0	0	0	1	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0026	410	2	0	2	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0027	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0028	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0029	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0030	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0031	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0032	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0033	410	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0034	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0035	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0036	410	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0037	410	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0038	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0039	410	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0040	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0041	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0042	410	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0043	410	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0044	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0045	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0046	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	a0047	410	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIRREL1_chr1_157988645_158105262	1/1	a0001	757	279	77	47	109	12	32	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0002	757	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0003	757	2	1	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0004	757	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0005	757	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0006	757	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0007	757	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	a0008	757	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL2_chr19_35851911_35872136	1/1	a0001	708	256	48	64	88	12	42	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0002	708	35	17	0	17	0	1	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0003	708	10	4	3	0	2	1	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0004	708	9	9	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0005	708	9	9	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0006	708	4	0	0	4	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0007	708	2	0	2	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0008	708	2	0	0	2	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0009	708	2	2	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136