JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KIRREL2_chr19_35851911_35872136	0/0	a0010	708	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0011	708	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0012	708	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0013	708	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0014	708	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0015	654	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0016	708	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0017	708	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0018	708	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0019	708	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	a0020	708	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL3_chr11_126418358_127005770	0/0	a0001	778	109	50	26	15	12	6	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	a0002	778	2	0	2	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	a0003	778	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	a0004	778	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	a0005	778	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KISS1R_chr19_912333_926005	0/1	a0001	398	310	80	55	122	14	38	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	1/0	a0002	398	93	8	19	50	4	11	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	a0003	398	9	9	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	a0004	398	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	a0005	398	1	0	0	0	0	1	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	a0006	398	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	a0007	398	1	1	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1_chr1_204185341_204201491	0/0	a0000	0	121	6	23	80	4	8	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	1/1	a0001	138	211	39	50	77	10	33	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0002	138	29	25	2	1	0	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0003	138	17	15	1	0	1	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0004	138	10	10	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0005	138	7	0	0	6	1	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0006	138	4	0	0	4	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	a0007	138	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KITLG_chr12_88487793_88585471	1/1	a0001	273	239	84	24	107	6	16	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	a0002	273	1	0	0	1	0	0	copy fasta	KITLG	chr12	88487793	88585471
KIT_chr4_54652957_54745715	1/1	a0001	976	243	68	55	84	5	29	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	a0002	976	20	3	5	8	1	3	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	a0003	976	2	2	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	a0004	976	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	a0005	976	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	a0006	976	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIZ_chr20_21121082_21251622	1/0	a0001	673	156	36	24	73	7	15	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/1	a0002	673	116	19	16	59	6	15	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0003	673	35	28	6	1	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0004	673	2	2	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0005	673	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0006	673	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0007	673	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0008	673	1	0	0	1	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	a0009	673	1	0	0	0	1	0	copy fasta	KIZ	chr20	21121082	21251622
KLB_chr4_39401930_39456533	1/0	a0001	1044	191	67	30	77	8	8	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/1	a0002	1044	103	9	32	41	4	16	copy fasta	KLB	chr4	39401930	39456533