Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANGPTL5_chr11_101885674_101921522	0/0	a0002	388	10	6	1	0	0	3	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0003	385	3	3	0	0	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0004	72	2	0	0	2	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	1/0	a0005	388	2	0	0	0	0	1	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0006	388	2	0	0	2	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0007	388	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0008	388	1	0	0	0	0	1	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0009	388	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0010	388	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL5_chr11_101885674_101921522	0/0	a0011	388	1	0	0	1	0	0	copy fasta	ANGPTL5	chr11	101885674	101921522
ANGPTL6_chr19_10087338_10107678	1/1	a0001	470	441	97	83	201	13	45	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0002	470	8	0	0	8	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0003	470	4	0	0	4	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0004	470	2	0	1	0	0	1	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0005	470	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0006	470	1	1	0	0	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0007	470	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0008	470	1	0	0	0	1	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0009	470	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0010	470	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL6_chr19_10087338_10107678	0/0	a0011	470	1	0	0	1	0	0	copy fasta	ANGPTL6	chr19	10087338	10107678
ANGPTL7_chr1_11184355_11200981	1/1	a0001	346	326	83	58	132	12	39	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	a0002	346	35	14	6	10	0	5	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	a0003	346	1	0	0	1	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	a0004	346	1	0	0	1	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL7_chr1_11184355_11200981	0/0	a0005	346	1	1	0	0	0	0	copy fasta	ANGPTL7	chr1	11184355	11200981
ANGPTL8_chr19_11234619_11246943	1/1	a0001	198	318	67	62	136	14	37	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0002	198	93	17	12	56	2	6	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0003	198	8	8	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0004	198	1	0	0	1	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0005	198	1	0	0	0	0	1	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0006	198	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0007	198	1	0	0	1	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0008	198	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0009	198	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANGPTL8_chr19_11234619_11246943	0/0	a0010	198	1	1	0	0	0	0	copy fasta	ANGPTL8	chr19	11234619	11246943
ANG_chr14_20683764_20699183	1/1	a0001	147	467	97	84	226	16	42	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	a0002	147	2	0	0	0	0	2	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	a0003	147	1	1	0	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	a0004	147	1	0	1	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANG_chr14_20683764_20699183	0/0	a0005	147	1	0	1	0	0	0	copy fasta	ANG	chr14	20683764	20699183
ANHX_chr12_133213312_133240877	0/1	a0001	483	246	28	42	143	8	24	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	1/0	a0002	483	135	60	29	27	4	14	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0003	483	41	1	8	16	5	11	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0004	483	8	7	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0005	483	6	4	2	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0006	483	1	0	0	0	1	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0007	483	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0008	483	1	0	0	0	0	1	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0009	483	1	0	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877