JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLB_chr4_39401930_39456533	0/0	a0003	1044	67	4	14	34	2	13	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0004	1044	4	3	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0005	1044	2	0	0	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0006	1044	2	0	1	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0007	1044	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0008	1044	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0009	1044	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0010	1044	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0011	672	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0012	1044	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0013	1044	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0014	1044	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0015	1044	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0016	1044	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	a0017	1044	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLC1_chr14_103624211_103706544	1/1	a0001	639	364	90	71	145	12	44	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	a0002	639	2	0	0	2	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	a0003	639	1	0	1	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	a0004	639	1	0	0	1	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC2_chr11_66252703_66272860	1/0	a0001	622	308	79	56	130	9	33	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0002	622	82	11	13	48	3	7	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0003	622	1	0	1	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0004	622	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0005	622	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/1	a0006	622	1	0	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0007	622	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	a0008	622	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC3_chr19_45335750_45356519	1/1	a0001	504	413	92	74	185	18	42	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0002	435	5	0	0	5	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0003	504	2	0	0	0	0	2	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0004	504	2	2	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0005	504	2	0	0	0	0	2	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0006	504	2	0	0	2	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0007	504	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0008	504	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0009	504	1	0	1	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0010	504	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0011	504	1	0	1	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0012	504	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0013	504	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	a0014	504	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC4_chr6_43054631_43080093	1/0	a0001	619	334	91	66	132	10	34	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/1	a0002	619	4	0	0	3	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	a0003	619	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	a0004	619	1	0	0	1	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	a0005	619	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	a0006	619	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLF10_chr8_102643784_102660725	1/1	a0001	480	424	86	78	196	15	47	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0002	480	22	0	2	19	0	1	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0003	480	4	4	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725