JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLF5_chr13_73054005_73082538	0/0	a0002	457	1	0	1	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	a0003	457	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	a0004	457	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF6_chr10_3770996_3790209	1/1	a0001	283	451	88	75	224	16	46	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	a0002	283	7	6	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF7_chr2_207069137_207170948	1/1	a0001	302	317	87	64	118	14	32	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	a0002	302	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF8_chrX_56227356_56296531	1/1	a0001	359	255	66	46	115	7	19	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	a0002	359	6	6	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	a0003	359	1	0	0	0	0	1	copy fasta	KLF8	chrX	56227356	56296531
KLF9_chr9_70379604_70419657	1/1	a0001	244	399	84	72	182	14	45	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	a0002	244	1	0	0	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLHDC10_chr7_130065534_130140705	1/1	a0001	442	379	94	75	153	14	41	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	a0002	442	7	0	1	5	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC1_chr14_49688120_49758150	1/1	a0001	406	208	82	48	50	10	16	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC2_chr14_49763153_49791385	1/1	a0001	406	327	93	62	113	14	43	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	a0002	406	3	0	0	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	a0003	406	3	0	0	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	a0004	406	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	a0005	406	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	a0006	406	1	0	0	0	0	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC3_chr6_43009249_43026294	1/1	a0001	382	318	90	68	122	8	28	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC4_chr16_87702812_87770986	1/1	a0001	520	199	40	42	84	6	25	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0002	520	117	26	19	55	2	15	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0003	520	17	1	5	2	4	5	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0004	520	11	1	0	10	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0005	520	7	5	2	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0006	520	4	1	0	3	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0007	520	3	3	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0008	520	3	2	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0009	520	2	0	2	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0010	520	2	2	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0011	520	2	1	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0012	51	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0013	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0014	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0015	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0016	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0017	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0018	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0019	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0020	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0021	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0022	520	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0023	520	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	a0024	520	1	0	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC7A_chr1_18475930_18490974	0/0	a0001	777	160	11	18	120	3	8	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/1	a0002	777	117	22	25	50	7	12	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	1/0	a0003	777	96	33	26	15	4	17	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0004	777	32	8	8	8	4	4	copy fasta	KLHDC7A	chr1	18475930	18490974