JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHDC7A_chr1_18475930_18490974	0/0	a0005	251	5	5	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0006	777	5	4	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0007	777	5	0	0	0	0	5	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0008	777	3	2	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0009	777	3	3	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0010	777	2	2	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0011	777	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0012	777	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0013	777	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0014	777	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0015	777	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0016	777	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0017	777	1	0	0	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0018	777	1	0	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0019	777	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	a0020	777	1	0	0	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7B_chr22_50540899_50556023	0/0	a0001	1211	166	25	33	86	7	15	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0002	1219	56	0	2	46	0	8	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	1/0	a0003	1235	39	8	13	8	5	4	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0004	1211	38	0	9	22	1	6	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0005	1211	17	16	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0006	1211	14	2	6	6	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0007	1211	11	7	1	0	1	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0008	1235	9	5	2	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0009	1219	6	6	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0010	1235	5	4	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0011	1243	5	0	5	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0012	1219	5	5	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0013	1259	4	0	0	3	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0014	1235	4	4	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/1	a0015	1215	3	1	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0016	1219	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0017	1211	3	2	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0018	1211	3	1	0	1	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0019	1195	3	0	1	2	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0020	1211	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0021	1235	2	0	0	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0022	1259	2	2	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0023	1219	2	0	0	2	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0024	1235	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0025	1211	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0026	1219	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0027	1235	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0028	1235	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0029	1215	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0030	1215	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0031	1235	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0032	1259	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0033	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	a0034	1211	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023