JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHL17_chr1_955584_970719	0/0	a0000	0	11	8	3	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	1/1	a0001	642	417	89	81	179	18	48	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	a0002	642	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	a0003	642	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	a0004	642	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	a0005	642	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL18_chr3_47277944_47351816	1/1	a0001	574	335	82	58	149	10	34	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	a0002	574	2	0	0	2	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	a0003	574	1	0	0	1	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL1_chr13_69695597_70113452	1/1	a0001	748	178	66	37	46	6	21	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	a0002	748	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	a0003	748	1	0	0	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	a0004	748	1	0	1	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	a0005	757	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL20_chr1_173709981_173791692	1/1	a0001	609	307	74	42	141	12	36	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	a0002	609	2	2	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	a0003	609	1	0	0	1	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL21_chr1_6585724_6607869	1/1	a0001	597	407	93	80	176	12	44	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0002	597	5	0	0	5	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0003	597	4	0	2	0	2	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0004	597	2	1	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0005	597	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0006	597	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0007	597	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	a0008	597	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL22_chr22_20436519_20500795	1/1	a0001	634	337	85	56	147	13	34	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	a0002	634	1	0	0	1	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	a0003	634	1	0	0	0	1	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	a0004	634	1	1	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL23_chr2_169728832_169756878	1/1	a0001	558	396	96	66	172	18	42	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	a0002	558	4	0	4	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL24_chr3_183630623_183689519	1/1	a0001	600	308	90	48	122	14	32	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	a0002	600	3	0	0	3	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	a0003	600	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL25_chr15_85754326_85799925	1/1	a0001	589	375	84	72	171	14	32	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0002	589	19	8	5	0	1	5	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0003	589	3	2	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0004	589	3	0	0	0	0	3	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0005	589	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0006	589	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0007	589	1	0	0	0	1	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0008	589	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0009	589	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	a0010	589	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL26_chr19_18632028_18676721	1/1	a0001	615	336	89	74	123	14	34	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	a0002	615	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	a0003	615	1	0	0	1	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL28_chr14_44919324_44966947	1/1	a0001	571	208	78	30	77	10	11	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	a0002	571	7	0	0	7	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	a0003	571	5	4	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947