JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHL33_chr14_20420852_20441166	1/0	a0010	797	5	0	4	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0011	797	4	4	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0012	797	4	2	1	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0013	797	4	1	0	0	1	2	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0014	797	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0015	797	3	1	0	1	1	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0016	797	3	3	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0017	797	3	0	0	0	0	3	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0018	797	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0019	797	2	1	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0020	797	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0021	797	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0022	797	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0023	797	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0024	797	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0025	797	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0026	575	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0027	797	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0028	797	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0029	797	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0030	797	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0031	797	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0032	797	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0033	797	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0034	793	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0035	797	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0036	797	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL34_chrX_21649690_21663330	1/1	a0001	644	253	69	54	100	9	19	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0002	643	3	0	0	3	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0003	644	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0004	644	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0005	644	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0006	305	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0007	644	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0008	644	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0009	644	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0010	112	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	a0011	644	1	0	0	0	0	1	copy fasta	KLHL34	chrX	21649690	21663330
KLHL35_chr11_75417394_75438203	1/1	a0001	583	409	94	72	177	16	48	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0002	583	3	3	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0003	2	2	0	2	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0004	583	2	0	0	0	1	1	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0005	583	1	0	0	0	1	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0006	583	1	1	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0007	583	1	0	0	1	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	a0008	583	1	0	0	0	0	1	copy fasta	KLHL35	chr11	75417394	75438203
KLHL36_chr16_84643511_84672686	1/1	a0001	616	448	98	70	212	18	48	copy fasta	KLHL36	chr16	84643511	84672686
KLHL38_chr8_123639442_123658801	0/1	a0001	581	254	56	44	120	10	23	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0002	581	63	4	4	46	0	9	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	1/0	a0003	581	52	13	16	14	1	7	copy fasta	KLHL38	chr8	123639442	123658801