Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCB1_chr7_87498017_87605884	0/0	a0005	1280	4	0	2	2	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0006	1280	3	0	3	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0007	1280	3	3	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0008	1280	2	0	1	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0009	1280	2	0	0	2	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0010	1280	2	2	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0011	1280	1	0	0	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0012	1280	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0013	1280	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/1	a0014	1280	1	0	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0015	1280	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0016	1280	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0017	1280	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0018	1280	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0019	1280	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0020	1280	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB4_chr7_87396696_87480680	1/1	a0001	1279	225	37	41	113	8	24	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0002	1279	46	31	7	3	2	3	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0003	1279	10	10	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0004	1279	2	2	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0005	1279	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0006	1279	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0007	1279	1	0	0	0	0	1	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0008	1279	1	0	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0009	1279	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0010	1279	1	0	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	a0011	1279	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB5_chr7_20610667_20762008	0/0	a0001	1257	58	8	12	27	2	9	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0002	1257	48	11	9	27	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0003	1257	44	0	9	32	0	3	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0004	1257	29	4	12	5	2	6	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	1/0	a0005	1257	20	5	4	1	4	5	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0006	1257	16	0	0	12	0	4	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0007	1257	16	9	7	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0008	1257	12	0	1	10	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0009	1257	8	2	1	3	1	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0010	1257	7	7	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0011	1257	7	2	1	1	1	2	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0012	1257	7	0	1	1	1	4	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0013	1257	6	0	0	5	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0014	1257	4	4	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0015	1257	3	0	0	3	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0016	1257	3	0	0	3	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0017	625	3	3	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0018	1257	3	3	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0019	1257	3	2	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0020	1257	2	0	0	2	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0021	1257	2	0	0	2	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0022	1257	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	a0023	1257	2	2	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008