Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANHX_chr12_133213312_133240877	0/0	a0010	483	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	a0011	483	1	0	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANK1_chr8_41648225_41802622	1/1	a0001	1880	233	58	46	84	12	31	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0002	1880	12	10	2	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0003	1880	10	3	1	3	0	3	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0004	1880	9	9	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0005	1880	3	3	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0006	1880	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0007	1880	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0008	1880	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0009	1880	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0010	1880	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0011	1880	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0012	1880	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0013	1880	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0014	1880	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0015	492	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	a0016	1880	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK2_chr4_113044653_113388736	1/1	a0001	3957	94	27	17	29	2	17	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0002	3957	53	27	8	11	1	6	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0003	3957	7	4	3	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0004	3957	5	5	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0005	3957	2	2	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0006	3957	2	2	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0007	3957	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0008	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0009	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0010	3957	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0011	3957	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0012	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0013	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0014	3957	1	0	0	0	1	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0015	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0016	3957	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0017	3957	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0018	3957	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0019	3957	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0020	3957	1	0	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	a0021	3957	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK3_chr10_60021298_60394875	1/0	a0001	4377	112	35	12	46	3	15	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0002	4377	18	2	6	5	3	2	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0003	4377	10	9	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0004	4377	9	9	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0005	4377	8	0	3	3	1	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0006	4377	4	4	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0007	4377	4	4	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0008	4377	3	2	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0009	4377	2	0	2	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0010	4377	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0011	4377	2	1	0	0	1	0	copy fasta	ANK3	chr10	60021298	60394875