JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLK4_chr19_50901351_50916395	0/0	a0008	254	1	0	0	0	0	1	copy fasta	KLK4	chr19	50901351	50916395
KLK5_chr19_50938303_50958038	1/1	a0001	293	379	88	76	156	14	43	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	a0002	293	1	0	0	0	0	1	copy fasta	KLK5	chr19	50938303	50958038
KLK6_chr19_50953631_50974591	1/0	a0001	244	297	73	73	106	13	31	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0002	244	9	8	1	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/1	a0003	244	3	2	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0004	244	2	2	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0005	244	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0006	244	1	0	0	0	0	1	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0007	244	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0008	244	1	1	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	a0009	244	1	0	0	0	1	0	copy fasta	KLK6	chr19	50953631	50974591
KLK7_chr19_50971468_50988917	1/1	a0001	253	381	94	72	161	12	40	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	a0002	253	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	a0003	253	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	a0004	253	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK8_chr19_50991008_51006604	1/1	a0001	260	403	85	68	200	8	40	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	a0002	260	13	11	1	0	0	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	a0003	260	2	0	0	2	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	a0004	260	1	0	0	0	0	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	a0005	260	1	0	1	0	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK9_chr19_50997508_51014592	1/1	a0001	250	434	94	78	206	10	44	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	a0002	250	4	2	0	2	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLKB1_chr4_186222507_186263471	0/0	a0001	638	133	35	24	58	7	9	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	1/0	a0002	638	119	10	27	58	7	16	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0003	638	104	25	20	49	0	10	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/1	a0004	638	49	6	9	20	2	11	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0005	638	8	0	0	8	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0006	638	5	3	2	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0007	638	5	5	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0008	638	2	0	0	2	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0009	638	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0010	638	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0011	638	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0012	638	1	0	0	1	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	a0013	638	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLLN_chr10_87854158_87868533	1/1	a0001	178	415	92	73	197	12	39	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0002	178	6	0	0	6	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0003	178	3	0	0	3	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0004	178	2	0	0	2	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0005	178	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0006	178	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0007	178	1	0	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	a0008	178	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLRB1_chr12_9589551_9612916	1/1	a0001	225	247	71	44	92	14	24	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0002	225	182	17	31	108	2	24	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0003	225	2	0	0	2	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0004	225	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0005	225	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0006	225	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916