JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLRB1_chr12_9589551_9612916	0/0	a0007	225	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	a0008	225	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRC1_chr12_10441028_10458377	0/1	a0001	233	432	94	73	208	16	40	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	1/0	a0002	233	5	4	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	a0003	233	1	0	1	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	a0004	233	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	a0005	233	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC2_chr12_10425599_10441010	0/0	a0000	0	64	18	7	33	1	5	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	a0001	231	204	18	40	112	13	21	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	1/0	a0002	231	154	58	33	44	2	16	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	a0003	231	2	2	0	0	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	a0004	231	1	0	0	1	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC3_chr12_10407315_10425595	0/1	a0001	240	219	67	38	89	3	21	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0002	240	207	20	41	111	14	21	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0003	240	7	6	1	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	1/0	a0004	240	5	4	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0005	240	3	0	0	3	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0006	240	2	0	1	0	1	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0007	240	2	0	0	0	0	2	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0008	4	1	1	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0009	240	1	0	0	1	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	a0010	67	1	0	1	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC4_chr12_10402384_10414757	0/0	a0001	158	241	45	50	109	13	24	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	1/1	a0002	158	114	27	19	57	3	6	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	a0003	158	91	26	13	36	0	16	copy fasta	KLRC4	chr12	10402384	10414757
KLRD1_chr12_10302870_10334608	0/1	a0001	179	395	74	71	195	10	44	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	1/0	a0002	179	32	24	7	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	a0003	179	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRF1_chr12_9822481_9850005	1/1	a0001	231	348	85	68	139	16	38	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	a0002	231	36	11	10	9	2	4	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	a0003	231	3	0	0	0	0	3	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	a0004	231	1	0	0	0	0	1	copy fasta	KLRF1	chr12	9822481	9850005
KLRF2_chr12_9876489_9900833	0/1	a0001	207	208	30	53	76	15	33	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	1/0	a0002	207	125	35	17	61	3	8	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	a0003	207	91	32	8	46	0	5	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	a0004	207	14	0	0	14	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	a0005	207	1	1	0	0	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	a0006	207	1	0	0	1	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRG1_chr12_8984546_9015751	1/1	a0001	189	364	84	64	160	14	40	copy fasta	KLRG1	chr12	8984546	9015751
KLRG2_chr7_139447690_139488673	0/0	a0001	409	138	29	15	75	8	11	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	1/1	a0002	409	136	6	35	72	3	18	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0003	409	52	27	15	3	2	5	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0004	409	40	8	2	28	0	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0005	409	14	7	3	0	1	3	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0006	409	12	4	0	5	2	1	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0007	409	4	4	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0008	409	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0009	409	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0010	352	1	0	0	1	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0011	409	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673