JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLRG2_chr7_139447690_139488673	0/0	a0012	409	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	a0013	409	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRK1_chr12_10367353_10395041	0/0	a0001	216	328	54	68	155	16	35	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	1/1	a0002	216	101	40	13	40	1	5	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	a0003	216	5	0	0	5	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	a0004	216	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	a0005	216	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	a0006	216	1	0	0	0	1	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	a0007	216	1	0	1	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KL_chr13_33011423_33071143	1/1	a0001	1012	313	58	47	163	10	33	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0002	1012	36	23	5	0	2	6	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0003	1012	25	0	7	17	0	1	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0004	1012	6	6	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0005	1012	3	2	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0006	1012	2	2	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0007	1012	2	1	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0008	1012	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0009	1012	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0010	1012	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0011	1012	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0012	1012	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0013	1012	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0014	1012	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0015	1012	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	a0016	1012	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KMO_chr1_241527378_241600642	0/0	a0000	0	1	1	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	1/1	a0001	486	377	90	63	173	12	37	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	a0002	486	34	0	7	13	4	10	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	a0003	486	5	5	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	a0004	486	4	0	0	4	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	a0005	486	1	0	0	0	0	1	copy fasta	KMO	chr1	241527378	241600642
KMT2A_chr11_118431492_118531832	1/1	a0001	3972	190	72	15	74	0	27	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0002	3974	2	0	0	2	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0003	3972	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0004	3972	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0005	3972	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0006	3972	1	0	0	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0007	3972	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0008	3972	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0009	3972	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	a0010	3972	1	0	1	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2B_chr19_35713003_35743878	0/1	a0001	2715	168	51	24	67	4	21	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	1/0	a0002	2715	129	13	37	59	6	13	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0003	2715	39	8	9	12	4	6	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0004	2715	13	8	1	3	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0005	2301	12	1	0	10	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0006	2714	4	4	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0007	2715	3	0	0	3	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0008	2301	2	0	1	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0009	2715	2	2	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878