JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KMT2B_chr19_35713003_35743878	0/0	a0010	2301	2	0	0	2	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0011	2715	2	2	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0012	2715	2	0	0	0	0	2	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0013	2715	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0014	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0015	2715	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0016	2715	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0017	2301	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0018	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0019	2715	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0020	2715	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0021	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0022	2715	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0023	2715	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0024	2715	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0025	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0026	2715	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0027	2715	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0028	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0029	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	a0030	2715	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2C_chr7_152129925_152441003	1/1	a0001	4911	84	29	11	33	1	8	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0002	4911	57	30	9	13	0	5	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0003	4911	5	5	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0004	4911	4	3	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0005	4911	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0006	4911	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0007	4911	2	0	0	1	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0008	4911	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0009	4911	2	1	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0010	4911	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0011	4911	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0012	4161	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0013	4911	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0014	4911	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0015	4911	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0016	4911	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0017	4911	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0018	4911	1	0	0	0	1	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0019	4911	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	a0020	4911	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2D_chr12_49013978_49065794	1/1	a0001	5537	202	36	40	97	9	18	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0002	5537	29	28	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0003	5537	13	0	0	12	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0004	5537	5	5	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0005	5537	4	1	3	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0006	5537	4	0	2	0	1	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0007	5537	4	0	0	4	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0008	5528	4	2	2	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0009	5528	2	2	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794