JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KMT2D_chr12_49013978_49065794	0/0	a0010	5537	2	1	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0011	5537	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0012	5537	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0013	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0014	5528	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0015	5537	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0016	2018	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0017	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0018	5537	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0019	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0020	5537	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0021	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0022	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0023	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0024	5537	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0025	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0026	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0027	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0028	5544	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0029	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0030	5541	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0031	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0032	5537	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0033	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0034	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0035	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0036	5537	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0037	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0038	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0039	5537	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0040	5528	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0041	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0042	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	a0043	5537	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2E_chr7_105009205_105120019	1/1	a0001	1858	285	80	64	107	6	26	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0002	1858	5	0	2	1	0	2	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0003	1858	4	0	4	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0004	1858	2	2	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0005	1858	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0006	1858	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0007	1858	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0008	1858	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0009	1858	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0010	1858	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0011	1858	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	a0012	1858	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT5A_chr12_123379132_123414353	1/1	a0001	352	331	84	70	125	14	36	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	a0002	352	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	a0003	352	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	a0004	352	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353