JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KMT5B_chr11_68149863_68218296	1/1	a0001	885	306	78	50	128	14	34	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0002	650	15	8	2	4	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0003	885	2	0	0	2	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0004	884	2	2	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0005	885	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0006	885	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	a0007	885	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5C_chr19_55334876_55353121	1/1	a0001	462	402	93	73	174	16	44	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	a0002	462	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	a0003	462	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	a0004	462	1	1	0	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	a0005	462	1	0	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KNCN_chr1_46540641_46556647	0/0	a0000	0	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	1/1	a0001	124	395	98	62	171	15	47	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	a0002	124	11	0	2	6	0	3	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	a0003	124	4	0	3	0	1	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	a0004	124	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	a0005	124	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNDC1_chr10_133155219_133231412	1/0	a0001	1749	130	29	33	51	6	10	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/1	a0002	1749	95	10	21	46	6	11	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0003	1749	18	13	5	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0004	1749	14	0	2	12	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0005	1749	11	0	3	4	3	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0006	1749	9	9	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0007	1749	8	6	2	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0008	1749	7	0	0	2	0	5	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0009	1749	7	7	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0010	1749	4	4	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0011	1749	4	4	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0012	1749	3	3	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0013	1749	3	0	0	0	2	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0014	1749	2	1	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0015	1749	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0016	1749	2	1	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0017	1749	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0018	1749	1	0	0	0	1	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0019	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0020	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0021	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0022	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0023	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0024	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0025	1749	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0026	1749	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0027	1749	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0028	1749	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	a0029	1749	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNG1_chr3_186712359_186749410	1/0	a0001	644	152	23	23	95	3	7	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/1	a0002	644	122	33	28	40	5	15	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0003	644	58	23	10	16	2	7	copy fasta	KNG1	chr3	186712359	186749410