JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KNG1_chr3_186712359_186749410	0/0	a0004	644	47	1	5	32	1	8	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0005	644	17	10	2	2	1	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0006	644	14	2	2	6	2	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0007	644	6	2	3	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0008	644	3	0	0	1	0	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0009	644	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0010	644	2	0	0	2	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0011	644	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0012	644	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0013	644	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0014	644	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0015	518	1	0	0	0	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0016	644	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	a0017	644	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNL1_chr15_40589249_40669342	1/0	a0001	2316	119	4	20	75	6	13	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/1	a0002	2316	99	8	18	52	2	18	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0003	2316	48	2	15	18	3	10	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0004	2316	27	26	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0005	2316	19	18	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0006	2316	9	9	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0007	2316	7	0	6	0	1	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0008	2316	4	0	0	4	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0009	2316	4	3	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0010	2316	3	0	0	3	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0011	2316	3	0	0	3	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0012	2316	3	3	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0013	2316	2	0	1	0	0	1	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0014	2316	2	0	0	2	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0015	2316	2	2	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0016	2316	2	0	0	2	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0017	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0018	2316	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0019	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0020	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0021	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0022	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0023	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0024	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0025	2316	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0026	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0027	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0028	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0029	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0030	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0031	2316	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0032	2316	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	a0033	2316	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNOP1_chr16_19696937_19723227	1/1	a0001	458	328	78	70	134	13	31	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0002	458	17	2	5	0	3	7	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0003	458	9	9	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227