JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KNOP1_chr16_19696937_19723227	0/0	a0004	458	7	0	1	6	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0005	458	4	0	0	0	0	4	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0006	458	2	0	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0007	458	2	2	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0008	458	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0009	458	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	a0010	458	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNSTRN_chr15_40377721_40399288	0/0	a0000	0	2	0	0	2	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	1/1	a0001	316	353	81	60	157	12	41	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	a0002	316	8	0	5	2	0	1	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	a0003	316	6	1	3	0	2	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	a0004	316	3	3	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	a0005	316	1	1	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	a0006	316	1	0	0	1	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNTC1_chr12_122522249_122631396	1/1	a0001	2209	243	34	56	109	11	31	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0002	2209	17	15	2	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0003	2209	16	0	6	0	3	7	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0004	2209	9	9	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0005	2209	5	0	0	5	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0006	2209	5	5	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0007	2209	3	3	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0008	2209	3	3	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0009	2209	2	0	0	0	0	2	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0010	2209	2	2	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0011	2209	2	2	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0012	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0013	2209	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0014	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0015	2209	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0016	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0017	2209	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0018	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0019	2209	1	0	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0020	2209	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0021	2209	1	0	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0022	2209	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0023	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	a0024	2209	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KPLCE_chr1_152714522_152725470	1/1	a0001	250	217	28	41	110	7	29	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0002	250	117	42	26	36	5	8	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0003	250	36	10	7	14	0	5	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0004	250	9	9	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0005	250	2	2	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0006	250	2	2	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	a0007	250	1	1	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPNA1_chr3_122416902_122519939	0/1	a0001	538	397	92	66	182	14	42	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	1/0	a0002	538	2	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	a0003	538	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA2_chr17_68030735_68051854	1/1	a0001	529	324	89	54	129	13	37	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	a0002	529	3	0	1	0	1	1	copy fasta	KPNA2	chr17	68030735	68051854