Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANK3_chr10_60021298_60394875	0/0	a0012	4377	2	2	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0013	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0014	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0015	4377	1	0	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0016	4377	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0017	4377	1	0	0	1	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/1	a0018	4377	1	0	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0019	4377	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0020	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0021	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0022	4377	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0023	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0024	4377	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0025	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0026	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0027	4377	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	a0028	4377	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANKAR_chr2_189669670_189751647	0/1	a0001	1434	243	68	53	90	10	21	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0002	1434	10	0	0	6	0	4	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0003	1434	10	3	0	4	0	3	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0004	1434	8	7	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0005	1434	6	5	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	1/0	a0006	1434	6	5	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0007	1434	2	2	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0008	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0009	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0010	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0011	1434	1	0	0	1	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0012	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0013	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0014	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0015	1434	1	0	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0016	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0017	1434	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	a0018	1434	1	0	0	1	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKDD1A_chr15_64906902_64963691	1/1	a0001	522	254	71	46	106	11	18	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0002	522	69	15	13	20	3	18	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0003	522	5	0	0	5	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0004	522	3	2	1	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0005	522	2	2	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0006	522	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0007	522	1	0	0	1	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0008	522	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0009	522	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	a0010	522	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1B_chr5_75606453_75676846	0/1	a0001	479	105	14	20	56	4	10	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0002	528	89	9	8	60	1	11	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0003	528	49	5	4	39	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	1/0	a0004	528	29	6	13	5	2	2	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	a0005	528	26	0	2	15	1	8	copy fasta	ANKDD1B	chr5	75606453	75676846